Locus no. | Best combination | Cross-validation consistency | Training balanced accuracy | Testing balanced accuracy | p-values * |
---|---|---|---|---|---|
SNP- SNP interactions * | |||||
2 | rs16944, rs3917356 | 7/10 | 0.6523 | 0.4785 | 0.32 |
3 | rs16944, rs3917356, rs1143634 | 8/10 | 0.6353 | 0.4874 | 0.62 |
4 | rs16944, rs3917356, rs1143634, rs1143627 | 6/10 | 0.5664 | 0.4956 | 0.88 |
Gene- smoking interactions ** | |||||
2 | rs16944, smoking | 10/10 | 0.7688 | 0.5721 | 0.011 |
3 | rs16944, rs3917356, smoking | 8/10 | 0.7129 | 0.4956 | 0.26 |
4 | rs16944, rs3917356, rs1143634, smoking | 5/10 | 0.5268 | 0.4785 | 0.76 |
5 | rs16944, rs3917356, rs1143634, rs1143627, smoking | 6/10 | 0.5664 | 0.4852 | 0.81 |