SNP ID | Chromosome | Functional Consequence | Nucleotide substitution | Primer sequences |
---|---|---|---|---|
rs1143634 + 3954 C > T | 2:112832813 (GRCh38) 2:113590390 (GRCh37) | Coding sequence variant, synonymous variant | C > T | F: 5′- -CTCAGGTGTCCTCGAAGAAATCAAA-3′ R: 5′- GCTTTTTTGCTGTGAGTCCCG-3′ |
rs16944 -511 (A > G) | 2:112837290 (GRCh38) 2:113594867 (GRCh37) | Upstream transcript variant, 2KB upstream variant | A > G | F: 5′- TGGCATTGATCTGGTTCATC-3′ R: 5′- GTTTAGGAATCTTCCCACTT-3′ |
rs3917356 C > T | 2:112834786 (GRCh38) 2:113592363 (GRCh37) | Intron variant | C > T | F:5′- CTAGCTAGGTCAGTTGTGCAGGTTCG-3′ R: 5′- AGCTGCAGCCAACAAGTTATGC-3′ |
rs1143627 G > A | 2:112836810 (GRCh38) 2:113594387 (GRCh37) | Upstream transcript variant, 2KB upstream variant | G > A | F: 5′- TCGAAGAGGTTTGGTATCTGCC − 3′ R: 5′- GCTTCCACCAATACTCTTTTCCC − 3′ |